How to fix "Attempted relative import in non-package" even with __init__.py, Install package from source throws "package not available" in R, package slidify not available as a binary package for R version 3.1.3, package gplots is not available for R version 3.0.2, warning: package grid is not available (for R version 3.1.2), not able to install fable package (error: is not available (for R version 3.4.2). https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages, https://stackoverflow.com/questions/1474081/how-do-i-install-an-r-package-from-source. It appears to be a bug in r-studio however. --N How can I use it? I made the mistake of forgetting to put repos=NULL when installing the R package from source code. Thanks a lot Mensur Dlakic ! The nature of simulating nature: A Q&A with IBM Quantum researcher Dr. Jamie We've added a "Necessary cookies only" option to the cookie consent popup. from the parent directory of DESCRIPTION) e.g. Is there a single-word adjective for "having exceptionally strong moral principles"? Making statements based on opinion; back them up with references or personal experience. (Of course, you may need to install.packages("installr") first.). to your account. Another possible warnings message you may get when interacting with CRAN mirrors is: Which may indicate the selected CRAN repository is currently be unavailable. privacy statement. I am trying to install the R package ComplexHeatmap but I keep getting the error message that the the dependency Cairo is not available. <@> DNA IlluminaHumanMethylation450k.db BiocManager"is not available". Thanks @zkamvar, I have homebrew and that worked for freetype. In this case, you can load an old version of the package using install_version(). when I try to install the package , it returns a message like this: Warning message: In .inet_warning(msg) : package 'ImpulseDE2' is not available for Bioconductor version '3.14' A version of this package for y. package twitterR is not available (for R version 3.1.0) It may have been archived (if it is no longer maintained and no longer passes R CMD check tests). package doMC NOT available for R version 3.0.0 warning in install.packages Perhaps you should add the directory containing `fribidi.pc. Edit (04/08/2020): I recently had an issue with a package (XML) reportedly not available for my R version (3.6.3, latest supported on Debian stretch), after an update of the package in CRAN. Learn more about Stack Overflow the company, and our products. One thing that happened for me is that the version of R provided by my linux distribution (R version 3.0.2 provided by Ubuntu 14.04) was too old for the latest version of the package available on CRAN (in my case, plyr version 1.8.3 as of today). The best answers are voted up and rise to the top, Not the answer you're looking for? (or I wonder if its because I installed R via Homebrew? C, C++, FORTRAN) then on Windows install Rtools or on OS X install the developer tools accompanying XCode, and install the source version of the package via: On CRAN, you can tell if you'll need special tools to build the package from source by looking at the NeedsCompilation flag in the description. For problems with Ubuntu, check the README: This solution worked for me for debian for the package, When I try install.packages('foobarbaz', repos=NULL) I get error " Error in install.packages("pair", repos = NULL) : type == "both" cannot be used with 'repos = NULL'", Thanks for the comment - I think I forgot to write the, This way do solved my problem, but still update my R to the newest version(from. Staging Ground Beta 1 Recap, and Reviewers needed for Beta 2. Good to know @hadley Thanks for reaching back so quick! Package names are case sensitive in R. 2. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. AC Op-amp integrator with DC Gain Control in LTspice, How do you get out of a corner when plotting yourself into a corner, Batch split images vertically in half, sequentially numbering the output files. limit Since this is a large matrix, you may wish to use the data viewer to examine it. Installation failure or a non-zero exit status, https://travis-ci.org/github/ramiromagno/gwasrapidd/jobs/740002831, https://packagemanager.rstudio.com/client/#/, init--> Install Errors. How should I deal with "package 'xxx' is not available (for R version x.y.z)" warning? To subscribe to this RSS feed, copy and paste this URL into your RSS reader. Done libcairo2-dev is already the newest version (1.16.0-4ubuntu1). For the Nozomi from Shinagawa to Osaka, say on a Saturday afternoon, would tickets/seats typically be available - or would you need to book? What to do when a package is not available for our R version? You are using an older version of R that does not get updated package binaries for Windows. Thats whats the obvious and what got through my mind at first but taking under consideration that I just got into the field I thought that this is no way whats going on and that it has to do with some deeper R knowledge. You mention 20.04 in the title, but then report your release as 14.04 via tag? What OS & release are you using? Already on GitHub? Sign in Staging Ground Beta 1 Recap, and Reviewers needed for Beta 2, Unable to install packages in latest version of RStudio and R Version.3.1.1, package pbkrtest is not available (for R version 3.2.2), R packages rgdal / rgeos "is not available (for R version 3.1.1)". In a case like this, the alternative to upgrading the R installation is the solution already mentioned. Implements a range of statistical methodology based on the negative binomial distributions, including empirical Bayes estimation, exact tests, generalized linear models and quasi-likelihood tests. If the package requires compiling code (e.g. "After the incident", I started to be more careful not to trip over things. I suggest using Hadley Wickham's devtoolspackage. Restart RStudio and then re-install the main package allowing for it to run through the updates on the dependencies. It would appear that either versions 1.5-9.2 or 1.5-9.4 will be compatible with your R version, so maybe installing one of those ahead of DESeq2 will do the trick. It is common to be confused about the difference between a package and a library, or a package and a dataset. It allows loading package from given directory: Thanks for contributing an answer to Stack Overflow! and what would happen then? The Cairo package also requires X11/Intrinsic.h from libxt-dev package. Alternatively, you can quickly check to see if the package is available by testing against the row names. Teams. Use Bioc installation steps: https://bioconductor.org/install. I know that may sound ridiculous given that your R version is only a couple of years old, but I don't make the rules. Follow Up: struct sockaddr storage initialization by network format-string. Suspected that this was the case. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Look at. I have ran into this issue with other packages. Maybe my work network somehow blocks these types of requests - I have to do something similar with Python and PIP. A concrete example: the latest CRAN version of package rattle for data mining, 5.3.0, does not support R version 3.4 because it had a big update between package versions 5.2.0 (R >= 2.13.0) and 5.3.0 (R >=3.5). Author: Yunshun Chen, Aaron TL Lun, Davis J McCarthy, Matthew E Ritchie, Belinda Phipson, Yifang Hu, Xiaobei Zhou, Mark D Robinson, Gordon K Smyth, Maintainer: Yunshun Chen
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